species:   Rhsol
pid:       PID0627
parent:    Rhi-milR-126
paralog:   
locus:     KB317786.1:44706-44800
matures:   ['UGAGACAUUCUGUGCUAAGAUG', 'UUUUUGUGCAGGAGGUUGAUGA']
srr:       SRR1994872
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994872.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994872.cram KB317786.1:44706-44800

2 out of bounds
22 alignments
22 proper strand
21 stranded perfect matches

         **************************                          *************************         
UGUUGAGUGCGCAUUUUUGUGCAGGAGGUUGAUGAACAAUCAUUUACAGCAUCAAAUGUUGCCUGAGACAUUCUGUGCUAAGAUGGCUCUUCUUG
....(((.((.((((((.((((((((.((((((((....)))))..((((((...)))))).....))).)))))))).)))))))).)))....
---------------------------------------------------------------UGAGACAUUCUGUGCUAAGAUG---------- l=22 a=0 c
-------------UUUUUGUGCAGGAGGUUGAUGA------------------------------------------------------------ l=22 a=1 c*
---------------------------------------------------------------UGAGACAUUCUGUGCUAAGAUGG--------- l=23 a=8 ma
-----------CAUUUUUGUGCAGGAGGUUGAUGA------------------------------------------------------------ l=24 a=0 ma*

------------AUUUUUGUGCAGGAGGUUGAUGA------------------------------------------------------------ l=23 a=1 
------------AUUUUUGUGCAGGAGGUUGAUGAA----------------------------------------------------------- l=24 a=1 
-------------UcUUUGUGCAGGAGGUUGAUGA------------------------------------------------------------ l=22 a=1 
-------------UUUUUGUGCAGGAGGUUGAUGA------------------------------------------------------------ l=22 a=1 (c*)
--------------UUUUGUGCAGGAGGUUGAUGAACA--------------------------------------------------------- l=24 a=1 
--------------UUUUGUGCAGGAGGUUGAUGAACAA-------------------------------------------------------- l=25 a=1 
---------------UUUGUGCAGGAGGUUGAUGAACA--------------------------------------------------------- l=23 a=1 
----------------UUGUGCAGGAGGUUGAUGAACAAU------------------------------------------------------- l=24 a=1 
-------------------------------------------------------AUGUUGCCUGAGACAUUCUGUGC----------------- l=23 a=1 
---------------------------------------------------------------UGAGACAUUCUGUGCUAAGAUGG--------- l=23 a=8 (ma)
---------------------------------------------------------------UGAGACAUUCUGUGCUAAGAUGGC-------- l=24 a=4 
---------------------------------------------------------------UGAGACAUUCUGUGCUAAGAUGGCU------- l=25 a=1 

mb-01011
ax-1011011
ku-01
ss-111111111010
fn-111
